Staining:Article Title: TGF-β mediates epigenetic control of innate antiviral responses and SIV reservoir size.
Article Snippet: Staining was performed as per BD staining protocol with BD Phosflow Fix Buffer I (BD, cat. no. 557870) and BD Phosflow Perm Buffer III (BD, cat. no. 558050). .. The staining panel included Live/dead BV510, Life Technologies cat. no. L34957; CD3 BUV805, BD cat. no. 612895, Clone UCHT1; CD4 BV605, BioLegend cat. no. 317438, Clone OKT4; CD8 BUV737, BD cat. no. 564629, Clone SK1; CD45RA BV650, BioLegend cat. no. 304136, Clone HI100; CD27 BUV615, BD cat. no. 751685, Clone O323; CCR7 PE-CF594, BD cat. no. 562381, Clone 2-L1-A; IRF7 AF488, Novus biologicals cat. no. NBP306987AF488, Clone 3D9; IFIT1 APC, Novus biologicals cat. no. NBP2-71005APC, Clone OTI3G8; pSTAT1 (p701) RB780, BD cat. no. 569144, Clone 4a; pSmad2 (pS465/pS467)/Smad3 (pS423/pS425) R718, BD cat. no. 567080, Clone O72-670; H3K27ac Pacific Blue, Cell signaling cat. no. 23349, Clone D5E4; IRF1 PE, BD cat. no. 566322, Clone 20/IRF1; PD-1 BV711, BD Biosciences cat. no. 564017, Clone EH12.1; HLA-DR BV786, BD Biosciences cat. no. 564041, Clone G46-6; CD19 BUV395, BD Biosciences cat. no. 563549, Clone SJ25C1; CD14 BV570, BioLegend cat. no. 301832, Clone M5E2; CD16 BUV661, BD Biosciences cat. no. 741693, Clone B73.1; and CD56 PE-Cy5, BD Biosciences cat. no. 555517, Clone B159. ..
Article Title: TGF-β mediates epigenetic control of innate antiviral responses and SIV reservoir size
Article Snippet: .. The staining panel comprised Live/dead BV510, Life Technologies cat. no. L34957 ; CD4 BV605, BioLegend cat. no. 317438, Clone OKT4; CD8 BUV737, BD cat. no. 564629, Clone SK1; CD45RA BV650, BioLegend cat. no. 304136, Clone HI100; CD27 BUV496, BD cat. no. 751678, Clone O323; CCR7 BUV563, BD cat. no. 741317, Clone 3D12; IFIT1 APC, Novus Biologicals cat. no. NBP2-71005APC, Clone OTI3G8; APOBEC3G AF700, Novus Biologicals cat. no. NBP1-77206AF700, polyclonal; pSTAT1 (p701) AF488, BD cat. no. AB_2737715, Clone 4a; pSMAD2(pS465/pS467)/pSMAD3 (pS423/pS425) PE-CF594, BD cat. no. 562697, Clone O72-670; p24 RD1, Beckman Coulter cat. no. 6604667, Clone KC57; PD-1 BV711, BD cat. no. 564017, Clone EH12.1; and BCL-2 BUV395, cat. no. custom, Clone Bcl-2/100. ..
Article Title: TGF-β mediates epigenetic control of innate antiviral responses and SIV reservoir size.
Article Snippet: Staining for HIV-1 p24 was performed on day 4 post-infection using BD Phosflow Fix Buffer I (BD) and BD Phosflow Perm Buffer III (BD) according to the manufacturer’s instructions. .. The staining panel comprised Live/dead BV510, Life Technologies cat. no. L34957; CD3 BUV615, BD cat. no. 612992, Clone UCHT1; CD4 BV605, BioLegend cat. no. 317438, Clone OKT4; CD8 BUV737, BD cat. no. 564629, Clone SK1; CD45RA BV650, BioLegend cat. no. 304136, Clone HI100; CD27 APC-eFluor 780, eBioscience cat. no. 47027942, Clone O323; CCR7 BUV563, BD cat. no. 741317, Clone 3D12; MX2 AF488, Santa Cruz Biotechnology cat. no. 271527, Clone H-7; IFIT1 APC, Novus Biologicals cat. no. NBP2-71005APC, Clone OTI3G8; APOBEC3G AF700, Novus Biologicals cat. no. NBP1-77206AF700, polyclonal; pSTAT1 (p701) PE-CF594, BD cat. no. AB_2737715, Clone 4a; pIRF3 (pSer396) PerCP, Bioss cat. no. bs-3195R-PerCP, polyclonal; pIRF7 (pSer471+pSer472) AF350, Bioss cat. no. bs-3196R-A350, polyclonal; HIV-1 core antigen FITC, Beckman Coulter cat. no. 6604665, Clone KC57 and CTV BV421, Thermo Fisher Scientific cat. no. C34571. ..
Article Title: TGF-β mediates epigenetic control of innate antiviral responses and SIV reservoir size
Article Snippet: Staining for HIV-1 p24 was performed on day 4 post-infection using BD Phosflow Fix Buffer I (BD) and BD Phosflow Perm Buffer III (BD) according to the manufacturer’s instructions. .. The staining panel comprised Live/dead BV510, Life Technologies cat. no. L34957 ; CD3 BUV615, BD cat. no. 612992, Clone UCHT1; CD4 BV605, BioLegend cat. no. 317438, Clone OKT4; CD8 BUV737, BD cat. no. 564629, Clone SK1; CD45RA BV650, BioLegend cat. no. 304136, Clone HI100; CD27 APC-eFluor 780, eBioscience cat. no. 47027942, Clone O323; CCR7 BUV563, BD cat. no. 741317, Clone 3D12; MX2 AF488, Santa Cruz Biotechnology cat. no. 271527, Clone H-7; IFIT1 APC, Novus Biologicals cat. no. NBP2-71005APC, Clone OTI3G8; APOBEC3G AF700, Novus Biologicals cat. no. NBP1-77206AF700, polyclonal; pSTAT1 (p701) PE-CF594, BD cat. no. AB_2737715, Clone 4a; pIRF3 (pSer396) PerCP, Bioss cat. no. bs-3195R-PerCP, polyclonal; pIRF7 (pSer471+pSer472) AF350, Bioss cat. no. bs-3196R-A350, polyclonal; HIV-1 core antigen FITC, Beckman Coulter cat. no. 6604665, Clone KC57 and CTV BV421, Thermo Fisher Scientific cat. no. C34571 . ..
Article Title: TGF-β mediates epigenetic control of innate antiviral responses and SIV reservoir size.
Article Snippet: .. The staining panel comprised Live/dead BV510, Life Technologies cat. no. L34957; CD4 BV605, BioLegend cat. no. 317438, Clone OKT4; CD8 BUV737, BD cat. no. 564629, Clone SK1; CD45RA BV650, BioLegend cat. no. 304136, Clone HI100; CD27 BUV496, BD cat. no. 751678, Clone O323; CCR7 BUV563, BD cat. no. 741317, Clone 3D12; IFIT1 APC, Novus Biologicals cat. no. NBP2-71005APC, Clone OTI3G8; APOBEC3G AF700, Novus Biologicals cat. no. NBP1-77206AF700, polyclonal; pSTAT1 (p701) AF488, BD cat. no. AB_2737715, Clone 4a; pSMAD2(pS465/pS467)/pSMAD3 (pS423/pS425) PE-CF594, BD cat. no. 562697, Clone O72-670; p24 RD1, Beckman Coulter cat. no. 6604667, Clone KC57; PD-1 BV711, BD cat. no. 564017, Clone EH12.1; and BCL-2 BUV395, cat. no. custom, Clone Bcl-2/100. ..
Article Title: TGF-β mediates epigenetic control of innate antiviral responses and SIV reservoir size
Article Snippet: Staining was performed as per BD staining protocol with BD Phosflow Fix Buffer I (BD, cat. no. 557870) and BD Phosflow Perm Buffer III (BD, cat. no. 558050). .. The staining panel included Live/dead BV510, Life Technologies cat. no. L34957 ; CD3 BUV805, BD cat. no. 612895, Clone UCHT1; CD4 BV605, BioLegend cat. no. 317438, Clone OKT4; CD8 BUV737, BD cat. no. 564629, Clone SK1; CD45RA BV650, BioLegend cat. no. 304136, Clone HI100; CD27 BUV615, BD cat. no. 751685, Clone O323; CCR7 PE-CF594, BD cat. no. 562381, Clone 2-L1-A; IRF7 AF488, Novus biologicals cat. no. NBP306987AF488, Clone 3D9; IFIT1 APC, Novus biologicals cat. no. NBP2-71005APC, Clone OTI3G8; pSTAT1 (p701) RB780, BD cat. no. 569144, Clone 4a; pSmad2 (pS465/pS467)/Smad3 (pS423/pS425) R718, BD cat. no. 567080, Clone O72-670; H3K27ac Pacific Blue, Cell signaling cat. no. 23349, Clone D5E4; IRF1 PE, BD cat. no. 566322, Clone 20/IRF1; PD-1 BV711, BD Biosciences cat. no. 564017, Clone EH12.1; HLA-DR BV786, BD Biosciences cat. no. 564041, Clone G46-6; CD19 BUV395, BD Biosciences cat. no. 563549, Clone SJ25C1; CD14 BV570, BioLegend cat. no. 301832, Clone M5E2; CD16 BUV661, BD Biosciences cat. no. 741693, Clone B73.1; and CD56 PE-Cy5, BD Biosciences cat. no. 555517, Clone B159. ..
other:Article Title: Fibroblast-derived alarmin promotes oral wound healing by activating regulatory T cells that relay pro-angiogenic and anti-inflammatory responses.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Goat polyclonal anti-GFP Novus Biologicals Cat. #: NB100-1770; RRID: AB_10128178 Rat monoclonal anti-GFP (clone FM2-64G) Biolegend Cat. #: 338001; RRID: AB_1279415 Goat polyclonal anti-mouse PI16 R&D Systems Cat. #: AF4929; RRID: AB_2299601 Rat monoclonal anti-mouse SCA1 (clone E13–161.7) Biolegend Cat. #: 122502; RRID: AB_756187 Chicken polyclonal anti-human/mouse KRT14 Biolegend Cat. #: 906004; RRID: AB_2616962 Goat polyclonal anti-mouse IL33 R&D Systems Cat. #: AF3626; RRID: AB_884269 Goat polyclonal anti-mouse COL3A1 Novus Biologicals Cat. #: NBP1-26547; RRID: AB_1853195 Rat monoclonal anti-mouse LY6C (clone HK1.4) Biolegend Cat. #: 128001; RRID: AB_1134213 Goat polyclonal anti-mouse VEGFA R&D Systems Cat. #: AF493NA; RRID: AB_354506 Rat monoclonal anti-mouse CD31 (clone MEC13.3) Biolegend Cat. #: 102502; RRID: AB_312909 Rat monoclonal anti-mouse F4/80 (clone CI-A3-1) Novus Biologicals Cat. #: NB600-404; RRID: AB_10003219 Goat polyclonal anti-mouse CD206 R&D Systems Cat. #: AF2535; RRID: AB_2063012 Goat polyclonal anti-human/mouse CD31 R&D Systems Cat. #: AF3628; RRID: AB_2161028 Rat monoclonal anti-mouse SCA1 (clone D7) Biolegend Cat. #: 108101; RRID: AB_313338 Rat monoclonal anti-mouse SCA1 (clone E13 161-7) Abcam Cat. #: ab51317; RRID: AB_1640946 Mouse monoclonal anti-human IL33 (clone Nessy-1) Enzo Life Sciences Cat. #: ALX-804-840-C100; RRID: AB_2051699 Goat polyclonal anti-human IL33 R&D Systems Cat. #: AF3625; RRID: AB_1151900 Goat polyclonal anti-human PI16 R&D Systems Cat. #: AF4980; RRID: AB_2163885 Mouse monoclonal anti-human CD31 (clone WM59) Biolegend Cat. #: 303101; RRID: AB_314327 Rabbit monoclonal anti-human KI67 (clone SP6) Abcam Cat. #: ab281847; RRID: AB_3674093 Chicken polyclonal anti-human/mouse KRT14 Biolegend Cat. #: 906004; RRID: AB_2616962 Rabbit monoclonal anti-human CD45 (clone D9M8I) Cell Signaling Technology Cat. #: 13917T; RRID: AB_2750898 Rabbit monoclonal anti-human FOXP3 (clone D2W8E) Cell Signaling Technology Cat. #: 98377T; RRID: AB_2747370 Rabbit polyclonal anti-human PI16 Novus Biologicals Cat. #: NBP1-92254; RRID: AB_11024372 (Continued on next page) Cell Reports 45, 116829, January 27, 2026 17
Proximity Ligation Assay:Article Title: Protocol to differentially quantify spatially resolved viral protein-cellular protein interactions via proximity ligation assays.
Article Snippet: .. Antibodies Monoclonal mouse anti-ABCG2 Antibody (BXP-21) (PLA 1:100) Santa Cruz Biotechnology Cat#sc-58222; RRID: AB_630828 Monoclonal mouse anti-StrepII-tag Antibody (517) (PLA 1:400) Novus Biologicals CatNBP2-43735 Polyclonal rabbit anti-StrepII-tag Antibody (WB 1:2,000; PLA 1:450) Abcam Cat#ab76949; RRID: AB_1524455 Chemicals, peptides, and recombinant proteins Bovine serum albumin (BSA) KPL Cat#5140-0006 Dulbecco’s Modified Eagle Medium (DMEM) Gibco Cat#41965039 (Continued on next page) STAR Protocols 7, 104361, March 20, 2026 5 ..
Western Blot:Article Title: Protocol to differentially quantify spatially resolved viral protein-cellular protein interactions via proximity ligation assays.
Article Snippet: .. Antibodies Monoclonal mouse anti-ABCG2 Antibody (BXP-21) (PLA 1:100) Santa Cruz Biotechnology Cat#sc-58222; RRID: AB_630828 Monoclonal mouse anti-StrepII-tag Antibody (517) (PLA 1:400) Novus Biologicals CatNBP2-43735 Polyclonal rabbit anti-StrepII-tag Antibody (WB 1:2,000; PLA 1:450) Abcam Cat#ab76949; RRID: AB_1524455 Chemicals, peptides, and recombinant proteins Bovine serum albumin (BSA) KPL Cat#5140-0006 Dulbecco’s Modified Eagle Medium (DMEM) Gibco Cat#41965039 (Continued on next page) STAR Protocols 7, 104361, March 20, 2026 5 ..
Recombinant:Article Title: Protocol to differentially quantify spatially resolved viral protein-cellular protein interactions via proximity ligation assays.
Article Snippet: .. Antibodies Monoclonal mouse anti-ABCG2 Antibody (BXP-21) (PLA 1:100) Santa Cruz Biotechnology Cat#sc-58222; RRID: AB_630828 Monoclonal mouse anti-StrepII-tag Antibody (517) (PLA 1:400) Novus Biologicals CatNBP2-43735 Polyclonal rabbit anti-StrepII-tag Antibody (WB 1:2,000; PLA 1:450) Abcam Cat#ab76949; RRID: AB_1524455 Chemicals, peptides, and recombinant proteins Bovine serum albumin (BSA) KPL Cat#5140-0006 Dulbecco’s Modified Eagle Medium (DMEM) Gibco Cat#41965039 (Continued on next page) STAR Protocols 7, 104361, March 20, 2026 5 ..
Modification:Article Title: Protocol to differentially quantify spatially resolved viral protein-cellular protein interactions via proximity ligation assays.
Article Snippet: .. Antibodies Monoclonal mouse anti-ABCG2 Antibody (BXP-21) (PLA 1:100) Santa Cruz Biotechnology Cat#sc-58222; RRID: AB_630828 Monoclonal mouse anti-StrepII-tag Antibody (517) (PLA 1:400) Novus Biologicals CatNBP2-43735 Polyclonal rabbit anti-StrepII-tag Antibody (WB 1:2,000; PLA 1:450) Abcam Cat#ab76949; RRID: AB_1524455 Chemicals, peptides, and recombinant proteins Bovine serum albumin (BSA) KPL Cat#5140-0006 Dulbecco’s Modified Eagle Medium (DMEM) Gibco Cat#41965039 (Continued on next page) STAR Protocols 7, 104361, March 20, 2026 5 ..
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